Source infector node ID. Use this ID to extract a single chain 


                    

                  

                

              

              

                

                  * Zoom in the network diagram to see the contact categories and IDs for person and event nodes
                

                

                  * High risk means Type of contact is Face_to_face_long or Medical_unsave or Touched_fluid or Touched_cloth or Physical_contact else Low risk
                

                

                  * Right click on the network diagram or legend to download or copy.
                

                

                  * The filters are based on complete data. Entities with missing values for the variable used for filtering are not considered
                

                

                  * The data used to generate indicators and figures in this app were obtained from
                  SORMAS
                  .
                

              

            

          

        

        

          

            
              Summary indicators
            
          

          

            

              

            

            

              

            

            

              

            

            

              

            

            

              

            

            

              

            

          

          

            

              

            

            

              

            

            

              

            

            

              

            

            

              

            

            

              

            

          

          

            

              

            

            

              

            

            

              

            

            

              

            

            

              

            

            

              

            

          

        

        

          

            

              

                
                  Total node counts by classification
                
              

              

                

              

            

          

          

            

              

                
                  Histogram of betweeness score
                
              

              

                

              

              

                

                  

                    

                      

                        
                      

                    

                    

                      

                        
                          Summary of node betweeness
                        
                      

                      

                    

                  

                

              

            

          

          

            

              

                
                  Histogram of number of contacts per node (Node degree)
                
              

              

                

              

              

                

                  

                    

                      

                        
                      

                    

                    

                      

                        
                          Summary of number of contacts per node (Node degree)
                        
                      

                      

                    

                  

                

              

            

          

        

      

      

        

          

            
          

          

            

              

                

                  
                  
                

              

              

                

                  
                  

                    
                    
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                      Case classification
                    

                    

                      

                      

                      

                      

                      

                    

                    

                      Case quarantine
                    

                    

                      

                      

                      

                      

                      

                      

                    

                    

                      Case gender
                    

                    

                      

                      

                      

                      

                      

                    

                    

                      Case age
                    

                    

                      

                      

                      

                      

                      

                    

                    

                      Case outcome
                    

                    

                      

                      

                      

                      

                    

                    

                      Case occupation
                    

                    

                      

                      

                      

                    

                    

                      Case Origin
                    

                    

                      

                      

                    

                  

                  

                  You can request more indicators you want to see here
                

                

                  

                    

                      

                    

                  

                  

                    
                      Meaning of column headers
                    
                  

                  

                    
                      Name:
                    
                    Name of administrative unit
                    Total:
                    Total number of cases reported within the time interval specified in the filter
                    Total_last24hrs:
                    Total number of cases reported in the last 24 hrs
                    Confirmed:
                    Total number of confirmed cases
                    Probable:
                    Total number of probable cases
                    Unclassified:
                    Total number of unclassified cases
                    Suspected:
                    Total number of suspected cases
                    Deseases:
                    Total number of death cases
                    No_Outcome:
                    Total number of cases  with no outcome
                    Recovered:
                    Total number of recovered cases
                    Unk_Outcome:
                    Total number of cases with unknown outcome
                    In_Country:
                    Total number of cases resulting from local transmission
                    Imported:
                    Total number of imported cases
                    Home_Q:
                    Total number of cases quarantine at home
                    Institutional_Q:
                    Total number of cases quarantine in an institution
                    No_Q:
                    Total number of cases that are not on quarantine
                    Other_Q:
                    Total number of cases quarantine at other places
                    Unk_Q:
                    Total number of cases with unknown quarantine
                  

                

                

                  

                

                

                  

                

                

                  

                    

                      
                        Case pyramid by Sex and Age
                      
                    

                    

                  

                

                

                  

                    

                      

                        

                          
                            Model selection: Goodness-of-fit criteria and statistics. Model with smallest values correspond to distribution with best fit.
                          
                        

                        

                          

                        

                      

                    

                  

                  

                    

                      

                        

                          

                            
                              Empirical and theoretical CDFs
                            
                          

                          

                            

                          

                        

                      

                    

                    

                      

                        

                          

                            
                              Q-Q plot
                            
                          

                          

                            

                          

                        

                      

                    

                  

                  

                    

                      

                        

                          
                            Empirical and theoretical density
                          
                        

                        

                          

                        

                      

                    

                    

                      

                        

                          

                            

                              

                                

                                  
                                

                              

                              

                                

                                  
                                    Summary statistics for observed serial interval
                                  
                                

                                

                                  

                                

                                

                                  
                                    n_value <= 0: number of records with negative or zero serial interval. This corresponds to asymptomatic transmission.
                                  
                                

                              

                            

                          

                        

                        

                          

                            

                              

                                

                                  
                                

                              

                              

                                

                                  
                                    Parameter estimate and 95% CI of distribtion with best fit to the data
                                  
                                

                                

                                  

                                

                                

                                  These estimates were estimated using boostrap based on the specified number of iteration specified in the filter.
                                                           For efficient estimates, set the specified number of iterations to be > 1000. This may takes some time for bootsrap
                                                          to complete.
                                

                              

                            

                          

                        

                        

                          

                            

                              

                                

                                  
                                

                              

                              

                                

                                  
                                    Estimate of mean serial interval
                                  
                                

                                

                                  

                                

                              

                            

                          

                        

                      

                    

                  

                  

                    

                      

                        

                          
                            Serial interval and fitted distribution for model with best fit to the data
                          
                        

                        

                          

                        

                      

                    

                  

                

                

                  

                    

                      

                        

                          
                            Distributions of number of infectee per infector (offspring distribution)
                          
                        

                        

                          

                        

                      

                    

                    

                      

                        

                          

                            

                              

                                

                                  
                                

                              

                              

                                

                                  
                                    Summary statistics for observed offspring distribution
                                  
                                

                                

                                  

                                

                                

                                  
                                    n_value <= 0: number of terminal infectee nodes. This corresponds to cases that were infected but did not infect further cases.
                                  
                                

                              

                            

                          

                        

                        

                          

                            

                              

                                

                                  
                                

                              

                              

                                

                                  
                                    Estimates of reproduction number (R) and dispersion parameter (k) using NB distribution
                                  
                                

                                

                                  

                                

                                

                                  
                                    SD: standard deviation, CI: confidence interval, a lower dispersion parameter k indicates  higher transmission heterogeneity, i.e. more transmissions resulted from a small number of people.
                                  
                                

                              

                            

                          

                        

                      

                    

                  

                

                

                  

                    

                      
                        Estimate of time dependent reproduction number Rt
                      
                    

                    

                      

                    

                    

                      

                        

                          

                            

                              
                            

                          

                          

                            

                              
                                Summary of estimated mean time dependent reproduction number
                              
                            

                            

                              

                            

                          

                        

                      

                    

                  

                

              

            

          

        

      

      

        

          

            
          

          

            

              

                

                  
                  
                

              

              

                

                  
                  

                    
                    
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                        Bar chart for events by region/district grouped by event status
                      
                    

                    

                  

                  

                    

                      

                        
                          Table 1: Event status by type of place
                        
                      

                      

                        

                      

                    

                    

                      

                        
                          Table 2: Event status by management status
                        
                      

                      

                        

                      

                    

                    

                      

                        
                          Table 3: Event status by risk level
                        
                      

                      

                        

                      

                    

                  

                  

                    

                      

                        
                          Fig 2: Event status
                        
                      

                      

                        

                      

                    

                    

                      

                        
                          Fig 3: Event source type
                        
                      

                      

                        

                      

                    

                    

                      

                        
                          Fig 4: Event district
                        
                      

                      

                        

                      

                    

                  

                

                

                  

                    

                      

                    

                  

                

                

                  

                    

                      
                        2 X 2 table. Change filter options plot for other variables.
                      
                    

                    

                  

                  

                    

                      

                        

                          
                            Dynamic pie chart. Change filter options to plot for another variables.
                          
                        

                        

                          

                        

                      

                    

                    

                      

                        

                          
                            Dynamic bar graph. Change filter options to plot for another variables.
                          
                        

                        

                          

                        

                      

                    

                  

                

              

            

          

        

      

      

        

          

            
          

          

            

          

        

      

      

        

          

            
          

          

            

              

                

                  
                  
                

              

              

                

                  
                  

                    
                    
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                      About SORMAS and SORMAS-Stats
                    
                  

                  

                    The Surveillance, Outbreak Response Management and Analysis System (SORMAS) is an open-source mobile health app that facilitates infectious disease control and outbreak management procedures in addition to disease surveillance and epidemiologic analysis for all levels of a public health system. SORMAS includes specific interfaces for 12 users (e.g., laboratorian, contact tracing officer, epidemiologist), disease-specific process modules for 21 epidemic-prone diseases and a customizable process module for unforeseen emerging diseases and a COVID-19 module, which we developed to support countries in the outbreak response. Users can operate SORMAS on the web or mobile app and synchronize bi-directionally with a central server via mobile telecommunication networks.
                  

                  

                    SORMAS-Stats contain functions to analyze and visualize surveillance data collected by SORMAS.
                  

                  

                    
                      Users, diseases and control measures in SORMAS